Video Tutorial for Bioinformatics softwares

Tutorial on how to make a YouTube tutorials

https://youtu.be/49XBYml-ycs Links to an external site.

Extra Credit for Screencast Video

For students interested in getting some extra credits, you could make a screencast video showing people how to install, run an algorithm, and examine the results. The video should be ~5 min long and as examples see the tutorials below. We will list some topics, which can be selected by the students on a first-come-first serve basis. You could also suggest a new algorithm that is related to our class topic. Please email xsliu.teach@gmail.com to claim a topic and get confirmation that a new topic you suggests is OK. Please upload your video to YouTube (we ask that you keep the video open for as long as possible), and send TAs the link of the video. 

Potential topics for 2017 video tutorials: 

RMA Links to an external site., Sarah Mohamed

RMA Links to an external site., Jess Rhodes

LIMMA Links to an external site., Yi Ding

GSEA

Clustering Links to an external site., Nancy Zhang

STAR Links to an external site., Alex Wu

Kalisto Links to an external site., Linying Zhang

Surat Links to an external site.

tSNE Links to an external site.Cluster Biomarker from scRNA Links to an external site.Favour Akinjiyan

Caret, Kajal Claypool

glmnet, William Yuan

BETA on Galaxy

Batch access TCGA data

Survival analysis Links to an external site., Kareem Carr

netMHCpan, Devin McCabe

 

Past videos 

MAGeCK-VISPR 1: Installation Links to an external site.

MAGeCK-VISPR 2: Pipeline Configuration Links to an external site.

MAGeCK-VISPR 3: Quality Control Demo Links to an external site.

MAGeCK-VISPR 4: Results Demo Links to an external site.

Unsupervised Machine Learning STAT 215 Links to an external site.

FastQC Links to an external site.

DAVID (Functional Annotation Tool) Tutorial Links to an external site.

RABIT basic tutorial Links to an external site.

picard Links to an external site.

TopHat in Odyssey Links to an external site.

DESeq Tutorial Links to an external site.

Sleuth Introduction Links to an external site.

Biostat 115 Screencast Video: Bedtools Links to an external site.

MACs Links to an external site.

BETA Links to an external site.

Quick tutorial on genome browser Links to an external site.

LASSO regression in R Links to an external site.

RABIT Links to an external site.

GCTA Links to an external site.

PLINK Links to an external site.