Video Tutorial for Bioinformatics softwares
Tutorial on how to make a YouTube tutorials
https://youtu.be/49XBYml-ycs
Links to an external site.
Extra Credit for Screencast Video
For students interested in getting some extra credits, you could make a screencast video showing people how to install, run an algorithm, and examine the results. The video should be ~5 min long and as examples see the tutorials below. We will list some topics, which can be selected by the students on a first-come-first serve basis. You could also suggest a new algorithm that is related to our class topic. Please email xsliu.teach@gmail.com to claim a topic and get confirmation that a new topic you suggests is OK. Please upload your video to YouTube (we ask that you keep the video open for as long as possible), and send TAs the link of the video.
Potential topics for 2017 video tutorials:
RMA
Links to an external site., Sarah Mohamed
RMA
Links to an external site., Jess Rhodes
LIMMA
Links to an external site., Yi Ding
GSEA
Clustering
Links to an external site., Nancy Zhang
STAR
Links to an external site., Alex Wu
Kalisto
Links to an external site., Linying Zhang
Surat
Links to an external site.
tSNE
Links to an external site.Cluster Biomarker from scRNA
Links to an external site.
Favour Akinjiyan
Caret, Kajal Claypool
glmnet, William Yuan
BETA on Galaxy
Batch access TCGA data
Survival analysis
Links to an external site., Kareem Carr
netMHCpan, Devin McCabe
Past videos
MAGeCK-VISPR 1: Installation
Links to an external site.
MAGeCK-VISPR 2: Pipeline Configuration
Links to an external site.
MAGeCK-VISPR 3: Quality Control Demo
Links to an external site.
MAGeCK-VISPR 4: Results Demo
Links to an external site.
Unsupervised Machine Learning STAT 215
Links to an external site.
FastQC
Links to an external site.
DAVID (Functional Annotation Tool) Tutorial
Links to an external site.
RABIT basic tutorial
Links to an external site.
picard
Links to an external site.
TopHat in Odyssey
Links to an external site.
DESeq Tutorial
Links to an external site.
Sleuth Introduction
Links to an external site.
Biostat 115 Screencast Video: Bedtools
Links to an external site.
MACs
Links to an external site.
BETA
Links to an external site.
Quick tutorial on genome browser
Links to an external site.
LASSO regression in R
Links to an external site.
RABIT
Links to an external site.